Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDTTNPIGFTDANELREKNRATVEKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNINIFGTDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELEDGKIKRNREFMNVFQQLRALSIPVPQIKREGIPT
3JUO Chain:A ((40-185))
----------------RQHNRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPDWVWTDIQIFETQDPNWFWVECRGEGAIVFPGYPRGQYRNHFLHSFRFENGLIKEQREFMNPCEQFRSLGIEVPEVRRDGLPS
General information:
TITO was launched using:
RESULT:
Template:
3JUO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29477 for 960 contacts (-30.7/contact) +
2D Compatibility (PS) -15780 + (NN) -7219 + (LL) 360
1D Compatibility (HY) -16000 + (ID) 4650
Total energy: -72766.0 ( -75.80 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3JUO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JUO-query.scw
PDB file :
Tito_Scwrl_3JUO.pdb
: