Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQKA
4FYJ Chain:A ((2-193))
-TAVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQK-
General information:
TITO was launched using:
RESULT:
Template:
4FYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119932 for 1620 contacts (-74.0/contact) +
2D Compatibility (PS) -20609 + (NN) -9196 + (LL) 352
1D Compatibility (HY) -24400 + (ID) 9600
Total energy: -183385.0 ( -113.20 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_4FYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYJ-query.scw
PDB file :
Tito_Scwrl_4FYJ.pdb
: