Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRPLVATVDLSAIRHNYALAKRCAPQR-QAFAVVKANAYGHGAREVVTALHDD-ADGFAVACLEEAAEVRALHASARILLLEGC-FEASEYALAGQLRLDLVIQGAEQGEAFLAAGLDIPLNVWLKLDSGMHRLGFDPAALRAWHARLRSHPGVRELN---------LISHFACADERNHPLTEQQLESFLGLLDLDFDQ-------RSLANSAAVLTIPAAHMDWLRPGIMLYGSTPLADLSAAELGLKPAMSLGAQLISLREVAVGESVGYGATWIAERPARIGTVSCGYADGYPRTAPAGTPVLVGGRRAILAGRVSMDMLAVDLSDLPEARVGDPVELWGAG-LSVDEVARACGTLGYELLSKVTARVPRRYSH |
4LUT Chain:A ((7-370)) | --PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKACVHVKID-------FQPNE--------ESVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNYKFMSD-KLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQK-NPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGEGEVTAERIAKDLGTINYEVLCMISRRVDRVY-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LUT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -223454 for 2764 contacts (-80.8/contact) +
2D Compatibility (PS) -35362 + (NN) -966 + (LL) 1840
1D Compatibility (HY) -24400 + (ID) 5500
Total energy: -287842.0 ( -104.14 by residue)
QMean score : 0.382
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