Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAIFAERALLPEGWARNVRFEISADGVLAEIRPDAN----ADGAERLGGAVL-PGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTW-RELMYRMVARLSPEQIEVIACQLYI-EMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGI-GLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGH-SLGLCFHSLRAVTPQQIATVLAAGHD-DLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALG--QPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGEERSARAFVQVLGELLD |
| 3LNP Chain:A ((57-443)) | -------------------------DGIILAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAMSLFRGLAD-----DLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFYPQ---------------QSGEAALAAGIRAVCFAPVLDFPTNYA-QNADEYIRKAIECNDRFN------NHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVSESLETFNKRPTQRLADIGFLNERVSCVHMTQVDDGDIKILQKTGASIIHCPESNLKLASGFCPIAKLSAANIPLAIGTDGAASNNDLDMFSETKTAALL----AKGVSQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLN--TLSSQPVFDPVSHMVYCTKSTQVSHVWVNGRCLLKNGE-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250655 for 3332 contacts (-75.2/contact) +
2D Compatibility (PS) -40264 + (NN) -13394 + (LL) 5280
1D Compatibility (HY) -12400 + (ID) 5200
Total energy: -316633.0 ( -95.03 by residue)
QMean score : 0.440
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