Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKLLLLTLPLLSSLVHAAPGPAMTREGIVGGQEAHGNKWPWQVSLRANDTYWMHFCGGSLIHPQWVLTAAHCVGPD----VADPNKVRVQLRKQYLYY----HDHLMTVSQIITHPDFYI-VQDGADIALLKLTNPVNISDYVHPVPLPPASET---FPSGTLCWVTGWGNIDNGVNLPPPFPLKEVQVPIIENHLCDLKYHKGLITGDNVHIVRDDMLCAGN-----EGHDSCQGDSGGPLVCKV--EDTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPKDF |
| 3RM2 Chain:H ((1-255)) | ----------------------------IVEGSDAEIGMSPWQVMLFRKSP-QELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKET---GQPSVLQVVNLPIVERPVCKDSTR---------IRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RM2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153893 for 1962 contacts (-78.4/contact) +
2D Compatibility (PS) -25110 + (NN) -9584 + (LL) 2908
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -208129.0 ( -106.08 by residue)
QMean score : 0.399
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