Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYVVLEGVDGAGKSTQVGLLKDRFK--N--ALFTKEPG-GTRMGESLRRIALNE-NISELARAFLFLSDRAEHIESVIKPALKEKKLIISDRSLISGMAYSQFS----SLELNLLATQSVLPEKIILLLINKENLKQRLSLKSLDKIENQGIEKLLTIQQKLKTHAYALQEKFGCEVLELDAQKSAKNLHEKIATFIECVV
1NN5 Chain:A ((10-201))
ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP-LIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKR------ERYE--NGAFQERALRCFHQLMKDT----TLNWKMVDASKSIEAVHEDIRVLSEDAI
General information:
TITO was launched using:
RESULT:
Template:
1NN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78255 for 1356 contacts (-57.7/contact) +
2D Compatibility (PS) -19717 + (NN) -7837 + (LL) 968
1D Compatibility (HY) -4400 + (ID) 2100
Total energy: -111341.0 ( -82.11 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1NN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NN5-query.scw
PDB file :
Tito_Scwrl_1NN5.pdb
: