Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLAVLGTGMIVKEVLPVLQK-IEGIDLVAILSTVRSLETAKDLAKEYNMSLATSEYKAVLDNEEIDTVYIGLPNHLHFDYAKEALLAGKHVICEKPFTLEASQLEELVSIANTR-QLILLEAITNQYLPNFDLVKEHLS--NLGDIKIVECNYSQYSSRYDAFKRGEIAPAFNPEMGGGALRDLNIYNLHLVIGLFGE-PITAQYLPNIE-------RGIDTSGVLVLDYGHF-KTVCIGAKDCSA--EVKSTIQGDKGSIAILGPTNTMPKISLTMNGQESHVY---QLNGDRHRMHDEFVIFEGIISNLDFKRAAQALEHSRTVMKVLDMVTK |
| 3CEA Chain:A ((9-334)) | LRAAIIGLGRLGERHARHLVNKIQGVKLVAACAL--DSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGKIIYMRGYGIDPISGME-----SFTKFATEADSGGIFVDMNIHDIDLIRWFTGQDPVQAYGLTSNIAAPQLADIGEFETGVAQLKMSDGVIATLIGGRHAAHGNQVELEVMGSNGWVRIGEHPDL-NRVTVFNDQGVVRPSLQSFGERFDTAFTDEVQDFVNNVIVGKQ--PEVTVDDGIKALKIAKACQQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CEA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -197460 for 2545 contacts (-77.6/contact) +
2D Compatibility (PS) -33010 + (NN) -11157 + (LL) 932
1D Compatibility (HY) -9600 + (ID) 2950
Total energy: -253245.0 ( -99.51 by residue)
QMean score : 0.449
|
|
|