Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTPDTSMKRVVVKIGSSSLTSLHGEISIRKLEALVDQVVKLKD-AGYEVILVSSGAVAAGY--RKLGFIQR------PEKLPEKQASASIGQGLLMEAYSKLFLAHGYVASQILITRSDFSDEY------R-YN---NV-RNTMNVLLERGIIPIINENDTVTVNRLKFGDNDTLAAKVAGLIDADMLVILSDIDGLYDGNPRTNPEAKKIQRVSEITPDIEACAGDTGSIVGTGGMRSKLDAFKIVMA-SGIKGFLGQADAGDILYHAVHEQAEGTYFEAEGTLPLNQKEQWIAFNSGPEGEMILSDDCSRKITNGQSSLYLDGVQKIKGKFKSGSVVRLMDSKGTEIGLGIVNYSSVQLQEPEKKKELTNRALIDQEAFVCHVDFSLPVN
1GS5 Chain:A ((1-258))-----MMNPLIIKLGGVLLDSE------EALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGKGQ------RIAEMTA--AKAEQLI---EQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA---------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1GS5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1287 -22089 -17.16 -93.20
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -17.16
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.438

(partial model without unconserved sides chains):
PDB file : Tito_1GS5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GS5-query.scw
PDB file : Tito_Scwrl_1GS5.pdb: