Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLVLAVLLTVGAAQEGISSRALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
3JQL Chain:A ((1-118))
----------------------NLYQFKNMIQCTVP-SRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGC-----RPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC
General information:
TITO was launched using:
RESULT:
Template:
3JQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74205 for 877 contacts (-84.6/contact) +
2D Compatibility (PS) -12748 + (NN) -8132 + (LL) 2612
1D Compatibility (HY) -13200 + (ID) 3400
Total energy: -109073.0 ( -124.37 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_3JQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JQL-query.scw
PDB file :
Tito_Scwrl_3JQL.pdb
: