Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
3V9M Chain:A ((1-117))
----------------------NLIQFGNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCQVHDNCYEQAGK-KGC-----FPKLTLYSWKCTGNVPTC-NSKPGCKSFVCACDAAAAKCFAKAPYKKENYNIDTKKRC
General information:
TITO was launched using:
RESULT:
Template:
3V9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54076 for 907 contacts (-59.6/contact) +
2D Compatibility (PS) -12581 + (NN) -8022 + (LL) 3020
1D Compatibility (HY) -10800 + (ID) 3400
Total energy: -85859.0 ( -94.66 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3V9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9M-query.scw
PDB file :
Tito_Scwrl_3V9M.pdb
: