Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDSKHQCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHPYFNRSKLLDFCKSKDIVLVAYSALGSQRDKRWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTAEDMKAIDGLDRNLHYFNSDSFASHPNYPYSDEY |
4F40 Chain:A ((11-279)) | -----AMVTLSNGVKMPQFGLGVWQSP--AGEVTENAVKWALCAGYRHIDTAAIYKNEESVGAGLRAS---G-VPREDVFITTKLWNTEQGYESTLAAFEESRQKLGVDYIDLYLIHWPRGKD----ILSK--------EGKKYLDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCT--VTPMVNQVELHPLNNQADLRAFCDAKQIKVEAWSPLG--K-----------LLSNPILSAIGAKYNKTAAQVILRWNIQKNLITIPKSVHRERIEENADIFDFELGAEDVMSIDALNTNSRY------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4F40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -161210 for 2308 contacts (-69.8/contact) +
2D Compatibility (PS) -29355 + (NN) -17946 + (LL) 1640
1D Compatibility (HY) -20800 + (ID) 5250
Total energy: -232921.0 ( -100.92 by residue)
QMean score : 0.622
|
|
|