Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGRKEEDDCSSWKKQTTNIRKTF-IFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKP--YSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWD-DISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNTALHRDIYPSVSLQIQKNFAKSKWRQAFNAAAVVHHMRKLHMNLHSPGVRPEVENRPPETQASETSRPSSPEITITEAPVLDHSVALPALTQLPCQHGRRPTAPGGRSLNCLVNGSLHISSSLVPMHQGSLAAGPCGCCSSCLNIGSKGKSSYCSEPTLLKKANKKQNFKSEVMVPVKASGSSHCRAGQTGVCLIM |
| 4PDS Chain:B ((26-301)) | ----------------TGIFKDFSII---------ATVKKAIERTTGKTFSVKII----------VTRELEVLQKLNHPRIVRLKGFY-----YYMVMEFVSGGDLMDFVAAHGAVGEDAGREISRQILTAIKYIHSMGISHRDLKPDNIL-IEQDDPVLVKITAFGLAKV-----------TLAYVAPEVI----NEYSSLVDMWSMGCLVYVILTGHLPFSGSTQDQLYKQIGRGSYH-EGPLKDFRISEEARDFIDSLLQVDPNNRSTAAKALNHPWIKMSPLYGDFSQISLSQSLSQQKLL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PDS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171068 for 1747 contacts (-97.9/contact) +
2D Compatibility (PS) -23536 + (NN) -13046 + (LL) 10680
1D Compatibility (HY) -22400 + (ID) 5200
Total energy: -224570.0 ( -128.55 by residue)
QMean score : 0.550
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