Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKELYRDSIVKSLKDKFNYGNIMQVPKLVKVCINMGVGGAATDNKAINEPFDDLYLIAGQKPVSTFAKKSISGFKIRKGATVGCKVTLRRDKMYEFLERLIYVALPREKDFRGFSVKQFDGNGNFSFGIKEHISFLEIDYDKISKIRGMDINIVTSAASDKEAKELLLAFKFPFFD
1IQ4 Chain:A ((3-179))
RLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK
General information:
TITO was launched using:
RESULT:
Template:
1IQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101433 for 1323 contacts (-76.7/contact) +
2D Compatibility (PS) -18932 + (NN) -6496 + (LL) 0
1D Compatibility (HY) -18400 + (ID) 5000
Total energy: -150261.0 ( -113.58 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1IQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IQ4-query.scw
PDB file :
Tito_Scwrl_1IQ4.pdb
: