Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNTFLICDECQAVN-IRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLAAL-------TEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
2LJK Chain:A ((28-100))
---VVEYCEPCGFEATYLELASAVKEQYPGIEIES----RLG-GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASN----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24976 for 374 contacts (-66.8/contact) +
2D Compatibility (PS) -7087 + (NN) -5219 + (LL) 3188
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -36344.0 ( -97.18 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_2LJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LJK-query.scw
PDB file :
Tito_Scwrl_2LJK.pdb
: