Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFVDTK-PNIVHDWIAKLE----RNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNAC------HKSY--------------TKSDVID-RTLKHCD--NCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAGLISHF--KGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE |
4UTR Chain:A ((12-255)) | ---DLTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFSRD-----PSLVWEFYHYRREVMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASRGVPVAEFNMECTP----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UTR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84252 for 1582 contacts (-53.3/contact) +
2D Compatibility (PS) -22876 + (NN) -8362 + (LL) 2352
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -130438.0 ( -82.45 by residue)
QMean score : 0.416
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