Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALETIATLREYRKSLKESVGFVPTMGALHRGHQSLIERSLK-ENSHTIVSVFVNPTQFGANEDFSAYPRPLEKDLALCEKSGVNAVFAPKIGEMYPYEAKQRLKLYAPAFLSHSLEGAVRKGHFDGVVQVVLRLFHLTNPTRAYFGKKDAQQLLIIQHLVQDLLLDIEIAPCEIVRDSDNLALSSRNVCLNATERKQALAIPKALEKIQQAIDRGEKACEKLKKLGLEILKNLEVDYLECCNHKLEPLKTIEPANTL--VLVAARVGKTRLLDNLWV
3ISJ Chain:A ((34-285))
--------------------VMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQ---PGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPM----PLNGSGRLLVAARLGTTRLLDNIAI
General information:
TITO was launched using:
RESULT:
Template:
3ISJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134039 for 2032 contacts (-66.0/contact) +
2D Compatibility (PS) -26855 + (NN) -10339 + (LL) 2944
1D Compatibility (HY) -19600 + (ID) 5350
Total energy: -193239.0 ( -95.10 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_3ISJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ISJ-query.scw
PDB file :
Tito_Scwrl_3ISJ.pdb
: