Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKMNAPDGVAVWVNEDRCKGCD-----ICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQCELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGRGK
3GYX Chain:B ((2-65))
-----------TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKA-----FNQEPEACWECYSCIKICPQGAITARPYADFAPMGGTCIPLRGSEDIMWTIKFRNGSVKRFKFPI
General information:
TITO was launched using:
RESULT:
Template:
3GYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62930 for 399 contacts (-157.7/contact) +
2D Compatibility (PS) -5988 + (NN) -275 + (LL) 1040
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -72203.0 ( -180.96 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_3GYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYX-query.scw
PDB file :
Tito_Scwrl_3GYX.pdb
: