Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKNKPTECPAGEKWAVPYADFLSLLLALFIALYAISAVNKSKVEALKTEFIKIFNYAPKPEAMQPVVVIPPDSGKEEEQMASESSKPASQNTETKATIARKGEGSVLEQIDQGSVLKLPSSLLFENA-TSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDNTPLNKTRFKSHYELAANRAYRVMKVLIQYGVDPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDANDLSKIHSILDEEFNPHKQQE
3S0Y Chain:A ((43-189))
----------------------------------------------------------------------------------------------------------SVLEQIDQGSILKLPSNLLFENATSDAINQDMML-YIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDANDLSKIHSILDNEFNPH----
General information:
TITO was launched using:
RESULT:
Template:
3S0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50341 for 1004 contacts (-50.1/contact) +
2D Compatibility (PS) -16541 + (NN) -15991 + (LL) 8044
1D Compatibility (HY) -18800 + (ID) 6550
Total energy: -100179.0 ( -99.78 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3S0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S0Y-query.scw
PDB file :
Tito_Scwrl_3S0Y.pdb
: