Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAAHSYFNEEMIKSASALMVVCSLKPSELLPTSHYMQNLYP-ESYKVRVIPSFAQMLGVR-FNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEILEERINKPKIVCLIALGKRVAEA----SKKSRKSKVDAITWL
3OF4 Chain:A ((2-209))
------MYLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSF-GQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVVL
General information:
TITO was launched using:
RESULT:
Template:
3OF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122739 for 1482 contacts (-82.8/contact) +
2D Compatibility (PS) -21737 + (NN) -5869 + (LL) 724
1D Compatibility (HY) -6000 + (ID) 2000
Total energy: -157621.0 ( -106.36 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3OF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OF4-query.scw
PDB file :
Tito_Scwrl_3OF4.pdb
: