Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYLNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPSSVNMQPWRFVVVESDAGKEKLSSLVRFNTRQNESSSAMILVFGDLQNFE-NGEKIYGESVERGLMPAEVKEQQMAKLSQYFASIPRSEAERVVLIDGGIVAMQLMLVARAHGYDTNPIGGFERTEVAEAFNMDPERYVPVMIVSIGKAKNSGYQSYRLPITDVTTFA
1NOX Chain:A ((6-205))
---PVLDAKTAALKRRSIRRYR-KDPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALRE-AAFGQAHVEEAPVVLVLYADLEDALAHLDEVIHP----GVQGE-RREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLP-SRAAIPALVALGYPAEEGYPSHRLPLERVVLWR
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67678 for 1425 contacts (-47.5/contact) +
2D Compatibility (PS) -22290 + (NN) -15258 + (LL) 964
1D Compatibility (HY) -11600 + (ID) 2650
Total energy: -118512.0 ( -83.17 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: