Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPSGSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKLSAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPT-------QLSGGQQQRVAIARALAGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQDGKLFHEEATQA
2FF7 Chain:A ((25-224))
------------------------LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL----RRQVGVVLQD-NVLLNRSIIDNISLA--NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ-----
General information:
TITO was launched using:
RESULT:
Template:
2FF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76406 for 1456 contacts (-52.5/contact) +
2D Compatibility (PS) -20830 + (NN) -10252 + (LL) 2904
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -122034.0 ( -83.81 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2FF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FF7-query.scw
PDB file :
Tito_Scwrl_2FF7.pdb
: