Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGAGKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTAKENVELAAQIAPNALDAETVLTQVGLSHRLDNFP--------------AQLSGGEQQRVAIARALAKAPKLLLCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRSIKENPEPMSIDDLEW
2FF7 Chain:A ((26-232))
-----------------------DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL----RRQVGVVLQD-NVLLNRSIIDNISLANP----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS------
General information:
TITO was launched using:
RESULT:
Template:
2FF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85222 for 1441 contacts (-59.1/contact) +
2D Compatibility (PS) -20738 + (NN) -8491 + (LL) 2924
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -131577.0 ( -91.31 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_2FF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FF7-query.scw
PDB file :
Tito_Scwrl_2FF7.pdb
: