Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELG----DFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWP-------------------KQDT-FFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRL--RTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRG----------GVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI
2PDK Chain:A ((7-299))----------LNNGAKMPILGLGTWK-SPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEKLREQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPGLKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPDRPWAKPEDPSLLEDPRIKAIAAKHNKTTAQVLIRFPMQRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVC------------


General information:
TITO was launched using:
RESULT:

Template: 2PDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98939 for 2162 contacts (-45.8/contact) +
2D Compatibility (PS) -28087 + (NN) -13568 + (LL) 1892
1D Compatibility (HY) -24800 + (ID) 5300
Total energy: -168802.0 ( -78.08 by residue)
QMean score : 0.464

(partial model without unconserved sides chains):
PDB file : Tito_2PDK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PDK-query.scw
PDB file : Tito_Scwrl_2PDK.pdb: