Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFYNI---DDKLRFVDVPGYGYAKVSKTERAKWG-KMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKYYEIPVIIVATKADKIPRGKW--NKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
1MKY Chain:A ((178-352))
-------------------------TDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIP------VDDEVFIDGRKYVFVDTAGL----------EKYSNYRVVDSI---EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY
General information:
TITO was launched using:
RESULT:
Template:
1MKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92266 for 1182 contacts (-78.1/contact) +
2D Compatibility (PS) -16896 + (NN) -7175 + (LL) 3100
1D Compatibility (HY) -6800 + (ID) 1800
Total energy: -121837.0 ( -103.08 by residue)
QMean score : 0.623
(partial model without unconserved sides chains):
PDB file :
Tito_1MKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKY-query.scw
PDB file :
Tito_Scwrl_1MKY.pdb
: