Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHCAENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLASS
3P0T Chain:A ((4-136))---SMASIFTKIINRELPGRFVYEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-----IIAGLEVPHLHVHVFPTRSLSDF-GFANVD--RNPSPESLDEAQAKIKAALAQ-


General information:
TITO was launched using:
RESULT:

Template: 3P0T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 599 -71931 -120.08 -540.83
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -120.08
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.509

(partial model without unconserved sides chains):
PDB file : Tito_3P0T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3P0T-query.scw
PDB file : Tito_Scwrl_3P0T.pdb: