Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASEFSRAELAAAFEKFEKTVARAAATRDWDCWVQHYTPDVEYIEHAAGIMRGRQRVRAWIQETMTTFPGSHMVAFPSLWSVIDESTGRIICELDNPMLDPGDGSVISATNISIITYAGNGQWCRQEDIYNPLRFLRAAMKWCRKAQELGTLDEDAARWMRRHGGP
2BNG Chain:A ((13-134))
------ETTEAIRAVEAFLNA----LQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQGR-VG---FEVKIHRIGADGA--AVLTERTDALII--GPLRVQFWVCGVFEV-DDGRITLWRDYFDVYDMFKGLL--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2BNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39228 for 865 contacts (-45.4/contact) +
2D Compatibility (PS) -13634 + (NN) -7901 + (LL) 2684
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -64079.0 ( -74.08 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_2BNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNG-query.scw
PDB file :
Tito_Scwrl_2BNG.pdb
: