Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
1MKA Chain:A ((1-171))
VDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQDTSAF
General information:
TITO was launched using:
RESULT:
Template:
1MKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130263 for 1323 contacts (-98.5/contact) +
2D Compatibility (PS) -17791 + (NN) -7489 + (LL) 0
1D Compatibility (HY) -22400 + (ID) 5800
Total energy: -183743.0 ( -138.88 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1MKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKA-query.scw
PDB file :
Tito_Scwrl_1MKA.pdb
: