Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------------MSKNARYAWRLSLGGLLLGLLACAVYLLAVPLGFKYGEIQ-VGHGLEHEGRIAWDAAGVPHIRAQSLEDGYFLLGYSHARDRLWQMEFARRYAGGTLSEVFGAKTLPMDRFARTLGFRRTAEGIYANLDAPTRVLLQRYS-DGINAYLELAPAALPLEFSLVRHERPGPWGPVDSLSL--------HLLYSWTLSANLGMQLQRLALAEHLDLARINEVFAPYPGERPPATRDYA------SLYRSLHGTPDAGKLLGQLPGSNVEGIGSNNWVVSASRSA----TGKPLLANDPHLRLTNPAAFYLASLKIPGLSLTGANFAGAPLFVIGHNQRIAW--------------GYTNTGSHIQDAYLER-------------VDPQDPRRYLTPDGYRPFETRLERIA--VRDGETVSLEVRSTRHGPVISDIYEPARLPQAQRDRLVIALAWTGLDRHDKTFPSLLA-INRAEGWEQFLDAAANFGVPPQNMVYADVEGNIGYVSAGRVPLRGADDDLHGLAPSPGWESRYDWVG--------YVPESAKPRSLNPREGFIATANQRIVPPDNAFDFGHDWVLPYRYDRIREWLGGPGQRTLEDSLELQNDEFSSVMASLLPKMLEQVSDPELRASEA---FALLQGWNHQAAADLAAPLIAG--------YWVRAFTRELLQ----PRIGTQLLASGWNQRN---YDGFLRLILDGQADLRFWCGQEQGCDLKLNQSLRRALDELRAAHGSAPSGWKWGEAHAALAEHVPFHKTPLRALFDLKNNKGGDNFSVNVGRFDYSDPANPFNTRIAATLRMVIDLADFDNSRYALSTRNSGLPFDGATDLNELWARGAYIRIADDAPDATDRQL-VLRPSASSSGEPRP----------------------------------- |
| 2IPC Chain:A ((1-939)) | MLGLLRRLFDNNEREIARYYKQVVEPVNRLEAEVEKLPDLAAAYRELKEKHEKGASLDELLPMAFALTRESAKRYLGMRHFDVQLIGGAVLHEGKIAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEW-MGPVYRGLGLSVGVIQHA---STPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL-----RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAE-----PGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIP---HQVLNAKHHAREAEIVAQAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFD-RYEWKVELFIKKMVA---GKEEEARALAQEL---GIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAMLDRMGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG-KDEEVKEAAIGMVEETVASLAENFL-NPEVHPEDWDLEGLKATLLDTAPQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELSPPLMRAVERFVILNVVDNAWKEHLHNLDVLRQGIFLRGYGQKDPFQEYKIEATRLFNEMVAFIKSEVAKFLFRLKVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IPC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79860 for 5847 contacts (-13.7/contact) +
2D Compatibility (PS) -81655 + (NN) -5983 + (LL) 1796
1D Compatibility (HY) -11200 + (ID) 7250
Total energy: -184152.0 ( -31.50 by residue)
QMean score : 0.192
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