Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIE-VQLTREPGGTPLAERIRELLL---APSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQG---GGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDA-GLPLAEVQAGLDRLLPNLLERLNG
4TMK Chain:A ((2-211))
-RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRG---IDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD-KSIHTIDAT-QPLEAVMDAIRTTVTHWVKEL--
General information:
TITO was launched using:
RESULT:
Template:
4TMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87742 for 1574 contacts (-55.7/contact) +
2D Compatibility (PS) -23176 + (NN) -16259 + (LL) -600
1D Compatibility (HY) -18000 + (ID) 4550
Total energy: -150327.0 ( -95.51 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_4TMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TMK-query.scw
PDB file :
Tito_Scwrl_4TMK.pdb
: