Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVINRKYRISRRLGINLWGRAKDP------VNRRKYPPGQRGILGFKRLSDFGKQFAAHKKFKFYYAISSKQLRRIFLDAYNRKGYTADNFIGILESRLSSVLYHSGLVPTIYSAKQLISHKHVTVNDKIVNIPSYRVKPGDIVKIRERAAKIPVIVEAVQK-QERKAPDYLEADSKEYSVKYLRIPQYSEVPYSADMEVNLVVEFYSR
1FJG Chain:D ((2-209))
-GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVQ--ENLVIEFYSR
General information:
TITO was launched using:
RESULT:
Template:
1FJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91520 for 1504 contacts (-60.9/contact) +
2D Compatibility (PS) -20818 + (NN) -5149 + (LL) 520
1D Compatibility (HY) -15200 + (ID) 3650
Total energy: -135817.0 ( -90.30 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1FJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJG-query.scw
PDB file :
Tito_Scwrl_1FJG.pdb
: