Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSPRAVVQLGKAQPAGEELATANQTAQQPSSPAMRRLTVDDFEIGRPLGKGKFGNVYLARLKESHFIVALKVLFKSQIEKEGLEHQLRREIEIQAHLQHPNILRLYNYFHDARRVYLILEYAPRGELYKELQKS-EKLDEQRTATIIEELADALTYCHDKKVIHRDIKPENLLLGFRGEVKIADFGWSVHT-PSLRRKTMCGTLDYLPPEMIEGRTYDEKVDLWCIGVLCYELLVGYPPFESASHSETYRRILKVDVRFPLSMPLGARDLISRLLRYQPLERLPLAQILKHPWVQAHSRRVLPPCAQMAS |
3COK Chain:A ((9-267)) | --------------------------------------KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLK---------------------------ESDVWSLGCMFYTLLIGRPPFDTDTVK-----VVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMS--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3COK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -161119 for 1662 contacts (-96.9/contact) +
2D Compatibility (PS) -23950 + (NN) -11361 + (LL) 5332
1D Compatibility (HY) -24800 + (ID) 4000
Total energy: -219898.0 ( -132.31 by residue)
QMean score : 0.415
|
|
|