Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGRIQRNKIKVEIKKLSHGKDLPLPCYATMQSAGMDLYAALGNSIVLNPLERLLIPTGIVIVIPNGFEGQIRPRSGLAAKYGITVLNSPGTIDSDYRGEVKVCLINLSNQPYEIKRGDRIAQILIAPVFRVIWDDAERLCT---EETERSAGGFGSSGR
3F4F Chain:B ((29-163))
--------LKIQLRSAS----ATVPTKGSATAAGYDIYAS--QDITIPAMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQ--TGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEK----IVDDAQIVVVDSLEESARGAGGFG----
General information:
TITO was launched using:
RESULT:
Template:
3F4F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61474 for 878 contacts (-70.0/contact) +
2D Compatibility (PS) -14394 + (NN) -5254 + (LL) 1264
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -92208.0 ( -105.02 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3F4F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4F-query.scw
PDB file :
Tito_Scwrl_3F4F.pdb
: