Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMQQLSLKHRLNN-----GDSVYGIFNSIPDPLMIEVIAASGYDFVVIDTEHVAINDETLAHLIRAAEA---AHIIPIVRVTAVIDRDIIKVLDMGARGIIVPHVKDRETVEHIVKLSRYYPQGLRSLN-GGRMARFGRT----PLLDAMEMANEHIMVIAMIEDVEGVMAIDDIAQVEGLDMIVEGAADLSQSLGIPW-----QTRDDQVTSHVQHIFEVVNAHGKHFCALPREDE-DIAKWQAQGVQTFILGDDRGKIYRHLSASLATSKQKGDDG
1IZC Chain:A ((23-294))
-TYPGNLRQALKDAMADPSKTLMGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNGVPIFGGAL-SVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSLAQARAS----
General information:
TITO was launched using:
RESULT:
Template:
1IZC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161663 for 2033 contacts (-79.5/contact) +
2D Compatibility (PS) -27716 + (NN) -13310 + (LL) -184
1D Compatibility (HY) -13200 + (ID) 3200
Total energy: -219273.0 ( -107.86 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_1IZC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IZC-query.scw
PDB file :
Tito_Scwrl_1IZC.pdb
: