Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
3MT6 Chain:Y ((A-203))
--LVPMVIEQT----RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL-----
General information:
TITO was launched using:
RESULT:
Template:
3MT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128181 for 1391 contacts (-92.2/contact) +
2D Compatibility (PS) -19937 + (NN) -6690 + (LL) 352
1D Compatibility (HY) -24400 + (ID) 6000
Total energy: -184856.0 ( -132.89 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3MT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MT6-query.scw
PDB file :
Tito_Scwrl_3MT6.pdb
: