Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGH-FAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
1PK9 Chain:B ((2-230))
----TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSK-VNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALE---
General information:
TITO was launched using:
RESULT:
Template:
1PK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141164 for 1939 contacts (-72.8/contact) +
2D Compatibility (PS) -23983 + (NN) -6154 + (LL) 696
1D Compatibility (HY) -24800 + (ID) 6050
Total energy: -201455.0 ( -103.90 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_1PK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PK9-query.scw
PDB file :
Tito_Scwrl_1PK9.pdb
: