Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVVKDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSGKTTLLTILGGLLSQTSGTVLYN--DAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIEQLTLVGQEAGMTKQQSSTRAIQLLKNIGLEDRLN--------VYPHQ---LSGGEKQRVAIMRAFMNNPKIILADEPTASLDADRATKVVEMIRQQIKEQQMIGIMITHDRRLFEYADRVIELEDGKITD
2FFA Chain:A ((24-223))
--------------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWLRRQ-VGVVLQDNVLLNR-SIIDNISLA--NPGM----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTV--IIIAARLSTVKNADRIIVMEKGKIVE
General information:
TITO was launched using:
RESULT:
Template:
2FFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108112 for 1410 contacts (-76.7/contact) +
2D Compatibility (PS) -19849 + (NN) -5795 + (LL) 2304
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -151202.0 ( -107.24 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2FFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FFA-query.scw
PDB file :
Tito_Scwrl_2FFA.pdb
: