Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVST-NDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
4DDK Chain:A ((19-207))
---------DVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQR--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DDK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113275 for 1433 contacts (-79.0/contact) +
2D Compatibility (PS) -20524 + (NN) -11309 + (LL) 9164
1D Compatibility (HY) -16400 + (ID) 4600
Total energy: -156944.0 ( -109.52 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_4DDK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DDK-query.scw
PDB file :
Tito_Scwrl_4DDK.pdb
: