Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRLQFHKKLPFHDLNIDYTFEKPVTAMMGASGSGKSTLFQCVSGLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQ--NLALFPNMNVYENIAFGLKVKKKKKKEQAEIQQQVRKMSDYLQIS-HLLYSSVQKLSGGEKQRVAMARAMITEPKLLLLDEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKRKS
4MKI Chain:A ((27-227))
-----------LKDINFSIDDEEFV-GIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLK--DIRKQVGLVFQYPEYQLFEE-TVFKDIAFG---PSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIE----
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105419 for 1518 contacts (-69.4/contact) +
2D Compatibility (PS) -21642 + (NN) -9419 + (LL) 2048
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -153682.0 ( -101.24 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: