Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTVMVRGDVGAVKAATEAGAAAAKNV--GTVMSTHVIPRPHTDVEEILPVRVKSDE
3CIM Chain:B ((4-91))
---AVGMIETRGFPAVVEAADSMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVSAGIEAANRVNGGEVLSTHIIARPHENLEYVLPI------
General information:
TITO was launched using:
RESULT:
Template:
3CIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42247 for 655 contacts (-64.5/contact) +
2D Compatibility (PS) -9758 + (NN) -3984 + (LL) 788
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -67351.0 ( -102.83 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3CIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CIM-query.scw
PDB file :
Tito_Scwrl_3CIM.pdb
: