Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LTEEVRCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLKHYNEIQDVALTDDDFLRILNQISSKQALIVYVVDIFDFDGSWLPGLPRFAGSNPVLLVGNKEDVLPKSLKRDKLTRWMRTRAKEQGLAATDVVLVSAEKGHGFDTLLEKIDELRNGQD------VYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLVDTPGIINHHQMAHFIDTTTLKAITPKKEVKPAVFQLNEEQTLFLGALARLDYVSGGRKSLVVYVSNNLPIHRTKLEKAEALYEKQAGLVLQPPTEEDMKTLPKLVPYSFTVKEKADIVFSGLGWVTIPEGGAKVTAWVPEGVSATIRTSLV |
| 1PUJ Chain:A ((9-281)) | ------------------------------------------------------HMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAQW-----------------VKVGKELELLDTPGILWPKFE----DELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHY------PERLKERYGLDEIPEDIAELFDAIGEKRG--CLMSGGLINYDKTTEVIIRDIRTEK--------FGRLSFEQPT-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PUJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72145 for 1952 contacts (-37.0/contact) +
2D Compatibility (PS) -26696 + (NN) -6970 + (LL) 7428
1D Compatibility (HY) -5600 + (ID) 2200
Total energy: -106183.0 ( -54.40 by residue)
QMean score : 0.324
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