Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEIKNLSKKFDQKT-----ILDNVNITLQDGEILSIVGPSGGGKTTLLRCISGLEKMDAGEILIDGEKI--DPMSRKDVENTIGVVFQ--EFHLFPHLSVLDNLILAPT---LARKTKKADAVKEAERLLGLL-DLADKANSMPYQLSGGQKQRVAIARALAMNPKVLLFDEPTSALDPDLRDHVAALILSLK-KVGITQIIVTHDHTFAEKVADQMMEVEPLKKEAI
4MKI Chain:B ((7-219))
-IKVENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVSLKDIRKQVGLVFQYPEYQLFEE-TVFKDIAFGPSNLGLSEEEVK-ERVYEAMEIVGISKELADKS---PFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKII----------
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108742 for 1510 contacts (-72.0/contact) +
2D Compatibility (PS) -21842 + (NN) -8612 + (LL) 1644
1D Compatibility (HY) -20800 + (ID) 3800
Total energy: -162152.0 ( -107.39 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: