Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1TPV Chain:A ((3-245))
-RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSAD-TEVVCGAPSIYL-DFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGNPERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWS--KVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKP-EFVDIINA--
General information:
TITO was launched using:
RESULT:
Template:
1TPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87255 for 2086 contacts (-41.8/contact) +
2D Compatibility (PS) -26624 + (NN) -12263 + (LL) 1268
1D Compatibility (HY) -17200 + (ID) 5100
Total energy: -147174.0 ( -70.55 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_1TPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TPV-query.scw
PDB file :
Tito_Scwrl_1TPV.pdb
: