Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMENVFDYEDIQLIPAKCIVNSRSECDTSVRLGGH-TFKLPVVPANMQTIIDEKLAISLAENGYFYVMHR-FEPETRI-DFIKDMNARGLFSSISVGVKDEEYEFVRQLAEENLTPEYVTIDIAHGHSNAVIEMIQHLKKHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASK---PIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGQTIEKDGKLYKEYFGSAS-----EFQKGEKKN--VEGKKMHVAHKGSIKDTLIEMEQDLQSSISYAGGTKLNAI-RNVDYVIVKNSIFNGDKY
3KHJ Chain:B ((13-339))----LTFEDILLVPNYSEVLPR-EVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKNSGGLRVGAAIGVN--EIERAKLLVEAGV--DVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGV--PQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMK---------MVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKKSSYVEITT--------


General information:
TITO was launched using:
RESULT:

Template: 3KHJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1845 -4797 -2.60 -16.15
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain B : 0.78

3D Compatibility (PKB) : -2.60
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.578

(partial model without unconserved sides chains):
PDB file : Tito_3KHJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KHJ-query.scw
PDB file : Tito_Scwrl_3KHJ.pdb: