Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARR-IPYVTAVDIDAPVLRRAQTRFA----NAPIRWLHADIMTAELPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSLR-NGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRA-LLPGACIRRLLYGRVLVTWRAPV
3DLC Chain:A ((43-213))
---------------------TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDW---------KEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISK---
General information:
TITO was launched using:
RESULT:
Template:
3DLC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130838 for 1241 contacts (-105.4/contact) +
2D Compatibility (PS) -17997 + (NN) -8820 + (LL) 2284
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -160671.0 ( -129.47 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3DLC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DLC-query.scw
PDB file :
Tito_Scwrl_3DLC.pdb
: