Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASEFSRAELAAAFEKFEKTVARAAATRDWDCWVQHYTPDVEYIEHAA-GIMRGRQRVRAWIQETMTTFPGSHMVAFPSLWSVIDESTGRIICELDNPMLD--PGDGSVISATNISIITYAGNGQWCRQEDIYNPLRFLRAAMKWCRKAQELGTLDEDAARWMRRHGGP
5CXO Chain:A ((3-129))
------DEQKRKEIVAEYFRK----VNEGDVDAIVEMFTENATIEDPVGKDVREGRAAQREYFNSNVTA--E---VTIEPGHLSAGQDGKSVAVALAAEMTNILDPNRTRVKINAVDVFTLTPEGKIDSMRVFWGMTDIGVW----------------------------
General information:
TITO was launched using:
RESULT:
Template:
5CXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47713 for 855 contacts (-55.8/contact) +
2D Compatibility (PS) -13749 + (NN) -7514 + (LL) 3184
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -70442.0 ( -82.39 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_5CXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CXO-query.scw
PDB file :
Tito_Scwrl_5CXO.pdb
: