Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MACERLGGQSGAADVDAAAPAMAAVNLTLGFAG-KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM----NDKVSGYRYSGDVLLGGRSIFNY------------------RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKL-VPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV-NPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFD-GRLVEEGPTEQLFSSPKHAETARYVAGLSGDVKDAKRGN |
1B0U Chain:A ((5-261)) | -------------------NKLHVIDLHKRYGGHEVLK-GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---------EGAIIVNG----QNINLVRDKDGQLKVADKNQLRLLRT-R-LTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDERAQG---KYPVHLSGGQQQRVSIARALAME-PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH-QGKIEEEGDPEQVFGNP-Q--SPRLQQFLKGSLKKLE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1B0U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132264 for 1853 contacts (-71.4/contact) +
2D Compatibility (PS) -25210 + (NN) -13979 + (LL) 2268
1D Compatibility (HY) -18400 + (ID) 3900
Total energy: -191485.0 ( -103.34 by residue)
QMean score : 0.524
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