Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDH-AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYTDALPEMPEPAIEVEPPVC-DCGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
1M2K Chain:A ((13-243))
KYLVALTGAGVSAESGIPTFRGK-DGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAP-----KIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVRKA--
General information:
TITO was launched using:
RESULT:
Template:
1M2K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91011 for 1935 contacts (-47.0/contact) +
2D Compatibility (PS) -25021 + (NN) -13665 + (LL) 480
1D Compatibility (HY) -14800 + (ID) 5150
Total energy: -149167.0 ( -77.09 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1M2K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2K-query.scw
PDB file :
Tito_Scwrl_1M2K.pdb
: