Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPPAKKGPATSARKGQKTRRREKKNVPHGAAHIKSTFNNTIVTITDPQGNVIAWASSGHVGFKGSRKSTPFAAQLAAENAARKAQDHGVRKVDVFVKGPGSGRETAIRSLQAAGLEVGAISDVTPQPHNGVRPPKRRRV
5AJ3 Chain:K ((81-196))
-----------------------KFEEIPIAHIKASYNNTQIQVVSAAHQPLAHASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARRL
General information:
TITO was launched using:
RESULT:
Template:
5AJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29008 for 875 contacts (-33.2/contact) +
2D Compatibility (PS) -13164 + (NN) -12659 + (LL) 896
1D Compatibility (HY) -4800 + (ID) 2700
Total energy: -61435.0 ( -70.21 by residue)
QMean score : 0.717
(partial model without unconserved sides chains):
PDB file :
Tito_5AJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AJ3-query.scw
PDB file :
Tito_Scwrl_5AJ3.pdb
: