Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEVKHSRLIILGSGPAGYTAAVYAARANLKPVVITGI-----QPGGQLTTTTEVDNWPGDVEGLTGPALMTRMQQHAERFDTEIVYDHIHTAELQQRPFTLKGDSGTYTCDALIIATGASAQYLGMSSEEAF----MGKGVSACATCD--GFFYRNQVVCVVGGGNTAVEEALYLANIAKEVHLIHRRDKLRSEKILQDKLFDKAENGNVHLHWNTTLDEVLGDASG--VTGVRLKSTIDGSTSELSLAGVFIAIGHKPNTDLFQGQLEMR-DGYLRIHG-GSEGNATQTSIEGVFAAGDVADHVYRQAITSAGAGCMAALDAEKYLDDH |
| 1VDC Chain:A ((4-324)) | -LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNP---KIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGT-----TQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207559 for 2702 contacts (-76.8/contact) +
2D Compatibility (PS) -33420 + (NN) -11929 + (LL) 72
1D Compatibility (HY) -27200 + (ID) 6950
Total energy: -286986.0 ( -106.21 by residue)
QMean score : 0.515
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