Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKEIINVVHGTFTQLRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACN-----LCAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVYEKHDLLISGPGKNPDYNYYRVAGMAIAGKPKGAAQNEAEPINVKSLLP
3GYX Chain:B ((5-65))
---------------------------------------------------------DPSKCDGCKGGEKTACMYICPNDLMILDPEEM-------KAFNQEPEACWECYSCIKICPQGAITARP--------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42530 for 346 contacts (-122.9/contact) +
2D Compatibility (PS) -5448 + (NN) -609 + (LL) 7236
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -44551.0 ( -128.76 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_3GYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYX-query.scw
PDB file :
Tito_Scwrl_3GYX.pdb
: